Tehran University of Medical Sciences Iranian Journal of Parasitology 1735-7020 4 2 2009 06 15 38 43 M Niyyati J Lorenzo-Morales M Mohebali S Rezaie F Rahimi Z Babaei C Martín-Navarro S Farnia B Valladares 2015 10 03 Background: The aim was to compare three different methods (direct examination, culture and PCR meth­ods) for the diagnosis of Acanthamoeba keratitis (AK) in corneal scrapes. Methods: Twenty eight corneal scrapes and contact lenses were collected from keratitis patients and re­ferred to the De­partment of Medical Parasitology and Mycology, School of Public Health, Tehran Univer­sity of Medical Sci­ences. Corneal scrapes were divided in three parts for direct examination, culture on non-nutrient agar and PCR analysis. PCR analysis was also performed using a 18S rRNA gene primer pair (DF3 region). DF3 (Diagnostic frag­ment 3) is a region of the nuclear small subunit ribosomal RNA gene which is specific for detecting Acan­thamoeba strains. Results:  Acanthamoeba was the causative agent of keratitis in 50% of the patients. Direct smear of all pre­pared corneal scrapes in AK patients was negative and culture was positive in only 14.3% of the isolates. PCR analysis was positive in 71.4% of AK patients. These three methods were negative in corneal scrapes of non-AK patients. The sensitivity and specificity of PCR technique for the detection of Acanthamoeba sp. were calculated as 71.4% and 100%, respectively. Conclusion: According to high sensitivity and specificity of PCR-based method, this study confirmed that PCR using 18S rRNA gene primers (DF3 region) is more useful for detecting AK cases compare to culture and direct microscopy methods. https://ijpa.tums.ac.ir/index.php/ijpa/article/view/96 https://ijpa.tums.ac.ir/index.php/ijpa/article/download/96/95